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bedtools NucBed (version 2.30.0)

BED/bedGraph/GFF/VCF/EncodePeak file:

FASTA file:

Profile the sequence according to strand:

Print the extracted sequence:

Report the number of times a user-defined sequence is observed:

Case-sensitive by default

Ignore case when matching -pattern:

What it does

Profiles the nucleotide content of intervals in a fasta file.

This tool is part of the bedtools package from the Quinlan laboratory.

Citation

If you use this tool in Galaxy, please cite:

Bjoern A. Gruening (2014), Galaxy wrapper