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bedtools TagBed (version 2.30.0)

BAM file:

BED/bedGraph/GFF/VCF/EncodePeak file:

Calculation based on strandedness?:

Minimum overlap required as a fraction of the alignment:

Default is 1E-9, i.e. 1bp.

Specify the tag to use:

Field from the annotation files to populate tags?:

What it does

Annotates a BAM file based on overlaps with multiple BED/bedGraph/GFF/VCF/EncodePeak files on the intervals in an input bam file

This tool is part of the bedtools package from the Quinlan laboratory.

Citation

If you use this tool in Galaxy, please cite:

Bjoern A. Gruening (2014), Galaxy wrapper