Galaxy | Tool Preview
Repository Actions
View repository
View change log
Browse repository tip files
Download as a .tar.gz file
Download as a .tar.bz2 file
Download as a zip file
sixpack (version 5.0.0+galaxy2)
Sequences:
Code to use:
Count the beginning of a sequence as a possible ORF:
Count the end of a sequence as a possible ORF:
Displays only ORFs starting with an M:
Display the translation of the DNA sequence in the 3 reverse frames:
Minimum size of Open Reading Frames (ORFs) to display in the translations:
Regions to put in uppercase:
If this is left blank, then the sequence case is left alone. A set of regions is specified by a set of pairs of positions. The positions are integers. They are separated by any non-alpha-numeric character. Three examples of region specifications are: 1) 24-45, 56-78 2) 1:45, 67=99;765..888 3) 1,5,8,10,23,45,57,99
Number the sequence at the beginning and the end of each line:
Number of nucleotides displayed on each line:
Line length of page:
Margin around sequence for numbering:
Display the ID name of the sequence:
Display the description of the sequence:
Number from which you want the DNA sequence to be numbered:
Format output as an HTML table:
Output sequence file format:
The input dataset needs to be sequences.
You can view the original documentation
here
.