Galaxy |

sixpack (version 5.0.0+galaxy2)

Sequences:

Code to use:

Count the beginning of a sequence as a possible ORF:

Count the end of a sequence as a possible ORF:

Displays only ORFs starting with an M:

Display the translation of the DNA sequence in the 3 reverse frames:

Minimum size of Open Reading Frames (ORFs) to display in the translations:

Regions to put in uppercase:

If this is left blank, then the sequence case is left alone. A set of regions is specified by a set of pairs of positions. The positions are integers. They are separated by any non-alpha-numeric character. Three examples of region specifications are: 1) 24-45, 56-78 2) 1:45, 67=99;765..888 3) 1,5,8,10,23,45,57,99

Number the sequence at the beginning and the end of each line:

Number of nucleotides displayed on each line:

Line length of page:

Margin around sequence for numbering:

Display the ID name of the sequence:

Display the description of the sequence:

Number from which you want the DNA sequence to be numbered:

Format output as an HTML table:

Output sequence file format: