Galaxy | Tool Preview

Ped2Fasta (version 2.0.0)

Authors Dereeper Alexis (alexis.dereeper@ird.fr), IRD, South Green platform

Please cite "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", Dereeper A. et al., Nucl. Acids Res. (1 july 2015) 43 (W1).

Galaxy integration Provided by Southgreen & Andres Gwendoline (Institut Français de Bioinformatique) & Marcon Valentin (IFB & INRA)

Support For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr

Ped2Fasta

Description

Convert PED file to Fasta File

Input file

PED file
PED file usually from VCF tools

Parameter

Output file name
Prefix for the output fasta file

Output file

Fasta file
PED file conversion

Working example

Input file

PED file

CATB1   CATB1   0       0       0       0       C       T       T       A       C       T       A       T       A       T       A       G       G       A

Parameter

Output name -> pedFile

Output file

pedFile.fa

YWYWWRRSYYMKRRKMYRKSRKYRYRYKRKRSKKSYRWYSYRRYRRRWYWWYYWRRYRSRWSSRMYRRKSWMSKWRRYYWMYKYWRSYRWRYMWYYYMKYKYWRYRYRY