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/srv/toolshed-repos/main/006/repo_6558/plasmidfinder.xml - This file refers to a file named plasmidfinder_database.loc.sample. Upload a file named plasmidfinder_database.loc.sample.sample to the repository to correct this error.
PlasmidFinder (version 2.1.6+galaxy1)
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What it does PlasmidFinder characterize plasmid sequences into whole genome sequencing. It is based on the [plasmidfinder database]( with hundreds sequences. Input PlasmidFinder takes raw data (with a k-mer analysisi) as reads or genome assembly (blastn analysis) to search plasmids. Output Some output files are availables - A fasta file with all available sequences detected in the genome - A fasta file with all plasmid sequences from the database - A summary of the analysis in tabular format - A Raw result file in text format - A JSON file could be use for other boinformatic analysis - A log file with analysis parameters