What it does PlasmidFinder characterize plasmid sequences into whole genome sequencing. It is based on the [plasmidfinder database](https://bitbucket.org/genomicepidemiology/plasmidfinder_db/) with hundreds sequences. Input PlasmidFinder takes raw data (with a k-mer analysisi) as reads or genome assembly (blastn analysis) to search plasmids. Output Some output files are availables - A fasta file with all available sequences detected in the genome - A fasta file with all plasmid sequences from the database - A summary of the analysis in tabular format - A Raw result file in text format - A JSON file could be use for other boinformatic analysis - A log file with analysis parameters