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Epifany (version 3.1+galaxy0)

Run tool in batch mode for -in:

Input: identification results:

select consensusxml,idxml data sets(s)

(Currently unused) Input: experimental design:

select tabular data sets(s)

Output type: auto detected by file extension but can be overwritten here:

Additionally calculate the target-decoy FDR on protein-level based on the posteriors:

Post-process inference output with greedy resolution of shared peptides based on the parent protein probabilities:

Also adds the resolved ambiguity groups to output

Set PSMs with probability higher than this to this maximum probability:

Parameters for the Algorithm sections

Parameters for the Algorithm section 0

Advanced Options

Advanced Options 0

Optional outputs:

Runs a Bayesian protein inference.