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XFDR (version 2.8+galaxy0)
select idxml,mzid,xquest.xml data sets(s)
The correspondig target protein id should be retrievable by deleting this prefix
Values outside of the tolerance window of the original search will effectively disable this filter
Values outside of the tolerance window of the original search will effectively disable this filter
Minimum delta score required, hits are rejected if larger or equal. The delta score is a ratio of the score of a hit and the score of the next best hit to the same spectrum, so the value range is between 0 and 1 with 1.0 meaning the scores are equal and 0.5 meaning the next best score is half as high as the current one
For a set of IDs from equal candidates (same pair of peptides, modifications and cross-linked positions), only the highest scoring hit will be considered. By default the score distribution will be estimated using all 1st ranked candidates
A number lower than the lowest score will effectively disable this filter
Should be about the same size as the smallest expected difference between scores. Smaller numbers will make XFDR more robust, but much slower. Negative numbers are not allowed. Should only be changed if the range of the main score changes or another score than the OpenPepXL score is used
Advanced Options
Advanced Options 0

Calculates false discovery rate estimates on crosslink identifications

For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/TOPP_XFDR.html