Galaxy |

PhyML (version 0.1.0)

Source file:

Select the input file

Choose between interleaved format or sequential format:

Number of data sets:

Data type:

Select between nucleic acids or amino acids

Transition/transversion ratio:

Can be a fixed positive value or type 'e' to get the maximum likelihood estimate

Nucleotide-based models:

Branch supports:

Character frequencies:

Proportion of invariable sites:

Can be a fixed value in the [0,1] range or type 'e' to get the maximum likelihood estimate

Number of relative substitution rate categories:

Must be a positive integer

Value of the gamma shape parameter:

Can be a fixed positive value or 'e' to get the maximum likelihood estimate

Tree topology search operation option:

Optimise topology: