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SRST2 - Short Read Sequence Typer (v2) (version 0.2.0)

Single-End or Paired-End FASTQ?:

FASTQ file:

FASTQ

MLST, MLST with ST, or Gene Presence/Absence?:

Fasta file of MLST alleles:

Character(s) separating gene name from allele number in MLST database (default '_'):

Maximum number of mismatches per read:

Options Type:

SRST2 - Short Read Sequence Typer (v2)

This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.