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CNVkit Export SEG (version 0.9.12+galaxy0)
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Export the segmented copy number data (from a .cns file) to the standard SEG format.

Segmented log2 ratios (.cns)

Tabular file with smoothed, merged segments of stable copy number, derived from the .cnr file. Represents final CNV calls.

chromosome start, end: Genomic coordinates of the segment
gene Gene(s) overlapping the segment.
log2 Mean log2 ratio of the segment.
probes Mean log2 ratio of the segment.
depth Average read depth.
weight Reliability weight.
p_value Statistical confidence (lower = more significant).