Alpha diversity (phylogenetic)
Computes a user-specified phylogenetic alpha diversity metric for all
samples in a feature table.
Parameters
- table : FeatureTable[Frequency]
- The feature table containing the samples for which alpha diversity
should be computed.
- phylogeny : Phylogeny[Rooted]
- Phylogenetic tree containing tip identifiers that correspond to the
feature identifiers in the table. This tree can contain tip ids that
are not present in the table, but all feature ids in the table must be
present in this tree.
- metric : Str % Choices('faith_pd')
- The alpha diversity metric to be computed.
Returns
- alpha_diversity : SampleData[AlphaDiversity] % Properties('phylogenetic')
- Vector containing per-sample alpha diversities.