qiime feature-table filter-seqs (version 2019.4)

--i-data: ARTIFACT FeatureData[Sequence] The sequences from which features should be filtered. [required]:

--i-table: ARTIFACT FeatureTable[Frequency] Table containing feature ids used for id-based filtering. [optional]:

--p-where: TEXT SQLite WHERE clause specifying feature metadata criteria that must be met to be included in the filtered feature table. If not provided, all features in `metadata` that are also in the sequences will be retained. [optional]:

--p-exclude-ids: --p-no-exclude-ids If true, the features selected by the `metadata` (with or without the `where` parameter) or `table` parameter will be excluded from the filtered sequences instead of being retained. [default: False]:

--m-metadata-files

--m-metadata-file 0

Filter features from sequences

Filter features from sequences based on a feature table or metadata. See the filtering tutorial on https://docs.qiime2.org for additional details. This method can filter based on ids in a table or a metadata file, but not both (i.e., the table and metadata options are mutually exclusive).

Parameters

data : FeatureData[Sequence]: The sequences from which features should be filtered.
table : FeatureTable[Frequency], optional: Table containing feature ids used for id-based filtering.
metadata : Metadata, optional: Feature metadata used for id-based filtering, with where parameter when selecting features to retain, or with exclude_ids when selecting features to discard.
where : Str, optional: SQLite WHERE clause specifying feature metadata criteria that must be met to be included in the filtered feature table. If not provided, all features in metadata that are also in the sequences will be retained.
exclude_ids : Bool, optional: If true, the features selected by the metadata (with or without the where parameter) or table parameter will be excluded from the filtered sequences instead of being retained.

Returns

filtered_data : FeatureData[Sequence]: The resulting filtered sequences.