Plot longitudinal feature volatility and importances
Plots an interactive control chart of feature abundances (y-axis) in each
sample across time (or state; x-axis). Feature importance scores and
descriptive statistics for each each feature are plotted in interactive bar
charts below the control chart, facilitating exploration of longitudinal
feature data. This visualization is intended for use with the feature-
volatility pipeline; use that pipeline to access this visualization.
Parameters
- table : FeatureTable[RelativeFrequency]
- Feature table containing features found in importances.
- importances : FeatureData[Importance]
- Feature importance scores.
- metadata : Metadata
- Sample metadata file containing individual_id_column.
- state_column : Str
- Metadata column containing state (time) variable information.
- individual_id_column : Str, optional
- Metadata column containing IDs for individual subjects.
- default_group_column : Str, optional
- The default metadata column on which to separate groups for comparison
(all categorical metadata columns will be available in the
visualization).
- yscale : Str % Choices('linear', 'pow', 'sqrt', 'log'), optional
- y-axis scaling strategy to apply.
Returns
visualization : Visualization