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qiime sample-classifier classify-samples-from-dist (version 2019.4)

Run k-nearest-neighbors on a labeled distance matrix.

Run k-nearest-neighbors on a labeled distance matrix. Return cross- validated (leave one out) predictions and accuracy. k = 1 by default

Parameters

distance_matrix : DistanceMatrix
a distance matrix
metadata : MetadataColumn[Categorical]
Categorical metadata column to use as prediction target.
k : Int, optional
Number of nearest neighbors
palette : Str % Choices('YellowOrangeBrown', 'YellowOrangeRed', 'OrangeRed', 'PurpleRed', 'RedPurple', 'BluePurple', 'GreenBlue', 'PurpleBlue', 'YellowGreen', 'summer', 'copper', 'viridis', 'plasma', 'inferno', 'magma', 'sirocco', 'drifting', 'melancholy', 'enigma', 'eros', 'spectre', 'ambition', 'mysteriousstains', 'daydream', 'solano', 'navarro', 'dandelions', 'deepblue', 'verve', 'greyscale'), optional
The color palette to use for plotting.

Returns

predictions : SampleData[ClassifierPredictions]
leave one out predictions for each sample
accuracy_results : Visualization
Accuracy results visualization.