Create InterMine Interchange (version 0.0.1)

Tabular file:

Feature Type column:

Feature Type:

Optional, will override column selection with static text value

Feature Identifier column:

Feature Identifier:

Optional, will override column selection with static text value

Organism Name column:

Organism Name:

Optional, will override column selection with static text value

InterMine-Galaxy exchange format

This file format exists as an intermediate step to import from Galaxy to InterMines and is not in itself a data format intended to be used for data storage or any purpose apart from Galaxy->InterMine interoperability.

This file has two mandatory columns and one optional column

Column 1 (mandatory)

Type of identifier, e.g. Gene or Protein. Must be a class in the InterMine data model. Gene or Protein is always a safe option.

Column 2 (mandatory)

Identifier this could be, as an example, a gene symbol like GATA1 or another other identifier, e.g. FBGN0000099 or perhaps a protein accession, or some other identifier.

Column 3 (optional)

Organism name - e.g. H. sapiens or Drosophila melanogaster. This is optional and does not have to be precise, but is good to provide if it is known.

For additional information, please see: