What it does
This tool enhances or suppresses the intensity of certain pixels relative to the rest of the image, by applying image processing filters to the image. It produces a grayscale image in which objects can be identified using an Identify module.
Input
Existing CellProfiler pipeline file (.cppipe) or generated by linking CellProfiler tools.
Output
The input CellProfiler pipeline file (.cppipe) in addition to the settings of this module.
IMPORTANT
The first tool in a CellProfiler workflow has to be Starting modules and the last one CellProfiler. You can also execute the entire pipeline with the final CellProfiler tool, in which you feed in the images you want to process as well.