Galaxy |

MascotAdapter (version 2.8+galaxy0)

input file in mzData format:

Note: In mode 'mascot_out' a Mascot results file (.mascotXML) is read select mascotxml,mzdata data sets(s)

output file type (for TOPPAS):

the instrument that was used to measure the spectra:

the precursor mass tolerance:

the peak mass tolerance:

the taxonomy:

the modifications i.e. Carboxymethyl (C):

(space separated list, in order to allow for spaces in list items surround them by single quotes)

the variable modifications i.e. Carboxymethyl (C):

(space separated list, in order to allow for spaces in list items surround them by single quotes)

the different charge states:

(space separated list, in order to allow for spaces in list items surround them by single quotes)

the database to search in:

the number of hits to report:

The enzyme descriptor to the enzyme used for digestion:

(Trypsin is default, None would be best for peptide input or unspecific digestion, for more please refer to your mascot server)

number of allowed missed cleavages:

significance threshold:

peptide homology threshold:

peptide ident threshold:

peptide rank:

protein score:

peptide score:

peptide expected charge:

show_unassigned:

additional information which is added to every peptide identification as metavalue if set > 0:

MIME boundary for mascot output format:

mass type:

Advanced Options

Advanced Options 0

Optional outputs: