Galaxy |

Tile (version 3.1.9+galaxy0)

Select the input CellProfiler pipeline:

Enter the name of an input image:

Image to be tiled, specified in NameAndTypes

Name the output image:

Enter a name for the final tiled image.

Tile assembly method:

Automatically calculate number of rows?:

Automatically calculate number of columns?:

Specify the number of columns you like to have in the tiled image. For example, if you want to show your images in a 96-well format, enter 12.

Image corner to begin tiling:

Direction to begin tiling:

Use meander mode?:

Select "Yes" to tile adjacent images in one direction, then the next row/column is tiled in the opposite direction. Some microscopes capture images in this fashion. The default mode is "comb", or "typewriter" mode; in this mode, when one row is completely tiled in one direction, the next row starts near where the first row started and tiles again in the same direction.

Another images

Another image 0

What it does

This module allows more than one image to be placed next to each other in a grid layout you specify. It might be helpful, for example, to place images adjacent to each other when multiple fields of view have been imaged for the same sample. Images can be tiled either across cycles (multiple fields of view, for example) or within a cycle (multiple channels of the same field of view, for example).

Input

Existing CellProfiler pipeline file (.cppipe) or generated by linking CellProfiler tools.

Output

The input CellProfiler pipeline file (.cppipe) in addition to the settings of this module.

IMPORTANT

The first tool in a CellProfiler workflow has to be Starting modules and the last one CellProfiler. You can also execute the entire pipeline with the final CellProfiler tool, in which you feed in the images you want to process as well.