Galaxy |

ctat_mutations (version 1.0.0)

Left/Forward strand reads:

Left read

Right/Reverse strand reads:

Right read

Select a pathology:

If you don't know, just choose 'General Purpose'

Select a reference genome:

CRAVAT email:

CRAVAT registered email id

This service uses the GATK4. GATK4 is licensed by the Broad Institute and is made available to academic users of this service for non-commercial use only. The full text of the license is available here: https://www.broadinstitute.org/gatk/about/license.html. For more information about GATK and full documentation, please visit the GATK website: https://www.broadinstitute.org.s

Mutation detection in RNA-Seq highlights the GATK Best Practices in RNA-Seq variant calling, several sources of variant annotation, and filtering based on CRAVAT.