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CRISPR Recognition Tool (version 1.2.0)

Input sequence as FASTA:

Minimum number of repeats a CRISPER must have:

-minNR, default 3

Minimum length of a CRISPER repeated region:

-minRL, default 19

Maximum length of a CRISPER repeated region:

-maxRL, default 38

Minimum length of CRISPER non repeated region:

or spacer region, -minSL, default 19

Maximum length of CRISPER non repeated region:

or spacer region, -maxSL, default 48

Length of search window to used to discover CRISPERs:

-searchWL

What it does

CRISPR Recognition Tool is a tool for automatic detection of clustered regularly interspaced palindromic repeats (CRISPR). It rapidly and accurately identifies CRISPRs in large DNA strings, such as genomes and metagenomes.

Input

DNA sequence in FASTA format