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IDFilter (version 3.1+galaxy0)

input file:

select consensusxml,idxml data sets(s)

Keep only peptide hits with variable modifications (as defined in the 'SearchParameters' section of the input file):

Only peptides matching exactly one protein are kept:

Remember that isoforms count as different proteins!

Proteins not referenced by a peptide are retained in the IDs:

Remove proteins according to the information in the user parameters:

Usually used in combination with 'delete_unreferenced_peptide_hits'

Peptides not referenced by any protein are deleted in the IDs:

Usually used in combination with 'score:prot' or 'thresh:prot'

Filtering by precursor attributes (RT, m/z, charge, length)s

Filtering by precursor attributes (RT, m/z, charge, length) 0

Filtering by peptide/protein scores

Filtering by peptide/protein score 0

Filtering by whitelisting (only peptides/proteins from a given set can pass)s

Filtering by whitelisting (only peptides/proteins from a given set can pass) 0

Filtering by blacklisting (only peptides/proteins NOT present in a given set can pass)s

Filtering by blacklisting (only peptides/proteins NOT present in a given set can pass) 0

This filter option removes peptide hits which are not in the list of in silico peptides generated by the rules specified belows

This filter option removes peptide hits which are not in the list of in silico peptides generated by the rules specified below 0

This filter option removes peptide hits which do not confirm with the allowed missed cleavages specified belows

This filter option removes peptide hits which do not confirm with the allowed missed cleavages specified below 0

Filtering by RT predicted by 'RTPredict's

Filtering by RT predicted by 'RTPredict' 0

Filtering by mass erros

Filtering by mass erro 0

Filtering best hits per spectrum (for peptides) or from proteins

Filtering best hits per spectrum (for peptides) or from proteins 0

Advanced Options

Advanced Options 0

Optional outputs: