What it does
Reshape the data for the next steps of STOC analyzes by adding zero count to sites that are in the dataset, for species having no count data for those sites.
Input description
A tabular file with abundance per year, per site and per species with no or few zero abundance.
The data file can be extracted from the STOC database on demand : romain.lorrilliere@mnhn.fr
The table needs the following structure (at least these 4 fours columns) :
| carre | annee | espece | abond |
|---|---|---|---|
| carreId1 | 2019 | especeId | 12 |
| ... | ... | ... | ... |
Output
A tabular file transformed, with one column indicating the year, one indicating the site, and one column for each species abundance.
This file is ready for the next filtering steps.
Source
UnPublished script available at http://www.vigienature.fr/sites/vigienature/files/atoms/files/analysestoceps_0.zip
First version written by romain.lorrilliere@mnhn.fr