usage: sixgill_filter [-h] --out OUT [--minorflength MINORFLENGTH]

[--minaaseqlength MINAASEQLENGTH] [--minreadcount MINREADCOUNT] [--minqualscore MINQUALSCORE] [--minlongesttryppeplen MINLONGESTTRYPPEPLEN] [--minmetagenescore MINMETAGENESCORE] [--maxmetapeptides MAXMETAPEPTIDES] [--debug] metapeptidefile

Filter a metapeptide database.

positional arguments:

metapeptidefile input metapeptide database file

optional arguments:

-h, --help	show this help message and exit
--out OUT	output metapeptide database file
--minorflength MINORFLENGTH
	minimum ORF length
--minaaseqlength MINAASEQLENGTH
	minimum AA sequence length
--minreadcount MINREADCOUNT
	minimum read count
--minqualscore MINQUALSCORE
	minimum basecall quality
--minlongesttryppeplen MINLONGESTTRYPPEPLEN
	minimum length of the longest tryptic peptide
--minmetagenescore MINMETAGENESCORE
	Minimum MetaGene score (-1 for none)
--maxmetapeptides MAXMETAPEPTIDES
	maximum number of metapeptides to write
--debug	Enable debug logging