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ClusterMassTracesByPrecursor (version 2.8+galaxy0)

MS1 mass traces:

select consensusxml data sets(s)

MS2 / SWATH mass traces:

select consensusxml data sets(s)

Assign unassigned MS2 fragments to all precursors (only for ms1_centrif):

Minimal pearson correlation score to match elution profiles to each othe:

Maximal lag:

(e.g. by how many spectra the peak may be shifted at most). This parameter will depend on your chromatographic setup but a number between 1 and 3 is usually sensible

Minimal number of ions to report a spectrum:

Maximal difference of the apex in retention time (in seconds):

This is a hard parameter, all profiles further away will not be considered at all

Swath lower isolation window:

Swath upper isolation window:

Advanced Options

Advanced Options 0

Optional outputs:

Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile.

For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/UTILS_ClusterMassTracesByPrecursor.html