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Summary.seqs (version
The count file is similar to the name file in that it is used to represent the number of duplicate sequences for a given representative sequence.

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The summary.seqs command will summarize the quality of sequences in an unaligned or aligned fasta-formatted sequence file.