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Homology Classifier and Filter (version 3.1.3+galaxy1)
GeneTree in nhx format, where nodes are in form of geneid_species

Classify and filter Homology from single GeneTree by utilising the ETE Toolkit.

Output format:

tabular:

gene_1 gene_2 homology
insr_rattusnorvegicus insr_musmusculus one-to-one
insr_rattusnorvegicus insr_homosapiens one-to-one
insr_rattusnorvegicus insr_pantroglodytes one-to-one
insr_rattusnorvegicus insr_susscrofa one-to-one
insr_musmusculus insr_homosapiens one-to-one
insr_musmusculus insr_pantroglodytes one-to-one
insr_musmusculus insr_susscrofa one-to-one
insr_homosapiens insr_pantroglodytes one-to-one
insr_homosapiens insr_susscrofa one-to-one
insr_pantroglodytes insr_susscrofa one-to-one

One-line CSV:

insr_rattusnorvegicus,insr_musmusculus,insr_homosapiens,insr_pantroglodytes,insr_susscrofa