Galaxy | Tool Preview

ETE mod (version 3.1.3+galaxy1)

Newick trees:

Verbosity level:

0=totally quite, 1=errors only, 2=warning+errors, 3=info+warnings+errors 4=debug (-v)

Reroot tree with outgroup (space separated list of leaf names):

Root the tree using the provided outgroup. If several names are provided, the first common ancestor grouping all of them will be selected as outgroup

Prune nodes from the tree (comma-separated list of leaf names):

Remove all nodes in the tree except the ones provided (empty does not prune)

Prune: preserve length:

Branch lengths of the removed nodes are added to the kept branches, thus preserving original tree length

Unroots the tree:

Sort branches:

Sort branches according to node names

Ladderize:

Sort branches by partition size

Resolve polytomies:

Converts polytomies into bifurcations

Standardize tree:

Standardize tree topology by expanding polytomies and single child nodes