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pharmCAT (version 1.7.0+galaxy0)

Which function of PharmCAT should be run?:

Input vcf file:

Must be formatted in modified official VCF format as detailed here: https://github.com/PharmGKB/PharmCAT/wiki/VCF-Requirements

Gene call TSV file from an outside tool:

Output reporter JSON report:

Output phenotyper JSON report:

PharmCAT is a tool to extract all CPIC guideline gene variants from a genetic dataset (represented as a VCF file), interpret the variant alleles, and generate a report.