What it does

ont_fast5_api is a simple interface to HDF5 files of the Oxford Nanopore FAST5 file format.

• concrete implementation of the FAST5 file schema using the generic h5py library
• plain-english-named methods to interact with and reflect the FAST5 file schema
• tools to convert between multi_read and single_read formats
• tools to compress/decompress raw data in files

fast5_subset extracts reads from multi read FAST5 file(s) based on a list of read IDs.

Input

Multi read file(s) in FAST5 format, that are stored in a flat TAR, and a list of read IDs that should be extracted.

Output

Multi read file(s) in FAST5 format containing a subset of the input file(s). The rseults are are stored in a flat TAR.

References

More information are available on github.