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Consensus.seqs (version 1.39.5.0)

fasta - Sequences to Bin:

Sequences must be aligned

name - Sequences Name reference:

Consensus sequence:

Cutoff - set a percentage of sequences that support the base:

For example: cutoff=95 would return the base that was supported by at least 95% of sequences. Must be between 1 and 100. Optional

Count - a count table:

this file can be generated by count.seqs

Output logfile?:

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The consensus.seqs command can be used in 2 ways: create a consensus sequence from a fastafile, or with a listfile create a consensus sequence for each otu. Sequences must be aligned.