Purpose

Convert coordinate data (such as BED or Galaxy Interval) into Picard Interval Format.

Dataset collections - processing large numbers of datasets at once

This will be added shortly

Inputs, outputs, and parameters

Either a SAM file or a BAM file must be supplied. Galaxy automatically coordinate-sorts all uploaded BAM files.

From Picard documentation( http://broadinstitute.github.io/picard/):

SEQUENCE_DICTIONARY=File
SD=File                       The sequence dictionary. You can either use dictionary pre-cached
                              on this instance of Galaxy, or create one on teh fly from a FASTA
                              file uploaded to history (right pane of the interface).

Additional information

Additional information about Picard tools is available from Picard web site at http://broadinstitute.github.io/picard/ .