Purpose

Takes any dataset that conforms to the fasta format and normalizes it so that all lines of sequence except the last line per named sequence are of the same length.

Dataset collections - processing large numbers of datasets at once

This will be added shortly

Inputs, outputs, and parameters

Either a SAM file or a BAM file must be supplied. Galaxy automatically coordinate-sorts all uploaded BAM files.

From Picard documentation( http://broadinstitute.github.io/picard/):

LINE_LENGTH=Integer           The line length to be used for the output fasta file.  Default value: 100.

TRUNCATE_SEQUENCE_NAMES_AT_WHITESPACE=Boolean
                              Truncate sequence names at first whitespace.  Default value: false. Possible values: {true, false}

Additional information

Additional information about Picard tools is available from Picard web site at http://broadinstitute.github.io/picard/ .