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Make.biom (version 1.39.5.0)

shared - OTU Shared file:

contaxonomy - consensus taxonomy:

The contaxonomy file is the taxonomy file outputted by classify.otu

metadata:

You can add sample data support here

use picrust program:

matrixtype - sparse or dense:

groups - Groups to include:

By default all are included if no selection is made

label - Select OTU Labels to include:

By default all are included if no selection is made

Output logfile?:

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The make.biom command converts a shared shared file to biom files. The output can be filtered by groups and labels.