Galaxy | Tool Preview

rename the scaffolds (version 2.3)

This tool is to rename scaffolds in the target genome so that the sequence names are less than 31 characters. Rename all scaffolds to scaffold_1, scaffold_2, ..., scaffold_N and also output a name mapping file.

Or truncate the scaffold names that are more than 31 characters and replace each invalid character (non-ASCII, '\t', '\n', '\x0b', '\x0c', '\r') with '_' and also output a name mapping file.