Galaxy |

Scater Filter (version 1.8.4+galaxy0)

R_scater_qc:

A serialized SingleCellExperiment object file in RDS format.

Parameters used to filter cells

Parameters used to filter cells 0

Parameters used to filter features

Parameters used to filter features 0

List of cells to include (optional):

Text file with one cell per line providing cell names to use as a subset.

List of cells to exclude (optional):

Text file with one cell per line providing cell names to discard as a subset.

List of features to include (optional):

Text file with one features per line providing feature names to use as a subset.

Output lists of pass-filter cells:

Output lists of pass-filter features:

More information can be found at https://bioconductor.org/packages/release/bioc/html/scater.html

Version history

1.8.4+galaxy0: Initial contribution. Suhaib Mohammed, Ni Huang and Pablo Moreno, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/ and and Teichmann Lab at Wellcome Sanger Institute.