Galaxy | Tool Preview

plotHeatmap (version 1.0)
Filtering parameters
Filtering parameters 0
Heatmap parameters
Heatmap parameters 0
Plot parameters
Plot parameters 0

What it does

It takes a list of genes based on set filtering criteria and draws them on heatmap.

Example

The following filtering options: A log FC threshold = 0.5 A log CPM threshold = 0.5 A p-value threshold = 0.05 An FDR threshold = 0.1 mean that you select genes whose values in output table from edgeR are: * absolute value of log FC is greater than or equal to 0.5 * log CPM is greater than or equal to 0.5 * p-value is less than or equal to 0.05 * FDR is less than or equal to 0.1