Galaxy | Tool Preview

miniasm (version 0.2.0)
Pairwise mapping format
Preselection options
Preselection options 0
Overlapping options
Overlapping options 0
Graph layout options
Graph layout options 0

Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.