Galaxy | Tool Preview

NetCDF xarray Selection (version 2022.3.0+galaxy0)
Select the tabular file which summarize the available variables and dimensions.
Use this option to get valid values at your custom coordinates.
Select Time series
Select Time series 0
additional filters
additional filter 0

What it does

This tool extracts variable values with custom conditions on dimensions.

It can use manualy given coordinates or automaticaly take them from a tabular file to filter informations.

If no values are availables at a coordinate X, the tool will search the closest coordinate with a non NA value.

Filter can be set on every dimension. Available filtering operations are : =, >, <, >=, <=, [interval], ]interval[.

Input

A netcdf file (.nc).

Variable tabular file from 'Netcdf Metadate Info'.

Tabular file with coordinates (only coordinates, no header!) and the following structure : 'lat' 'lon'.

Outputs

A single output with values for the wanted variable if there is only one coordinate.

A data collection where one file is created for every coordinate, if multiple coordinates from tabular file.


The xarray select tool can be used after the xarray Info.