Galaxy |

Raven (version 1.8.3+galaxy0)

input_reads:

Length of minimizers used to find overlaps:

Length of sliding window from which minimizers are sampled:

Threshold for ignoring most frequent minimizers:

Threshold for overlap between two reads in order to construct an edge between them:

If set to zero, this functionality is disabled

Maximum number of overlaps that will be taken during FindOverlapsAndCreatePiles stage:

Minimal unitig size:

Number of times racon polishing is invoked:

match:

mismatch:

gap:

output graphical fragment assembly file?:

Use micromizers instead of mimizers in graph construction:

Performance will increase slightly and memory consumption will decrease but results could be slightly worse

What it does

raven is a de novo genome assembler for long uncorrected reads.

Input - fasta / fastq / fasta.gz / fastq.gz data

Output

References

More information are available on the github .