Galaxy |

plotDEXSeq (version 1.48.0+galaxy0)

DEXSeqResults object:

A DEXSeqResults object in RDS format. This can be output from the DEXSeq tool

Specify the primary factor name in the DEXSeqResults object:

Only letters, numbers and underscores will be retained in this field

Genes to plot:

Select to input a single gene ID or a list of IDs. Default: single gene ID

Gene identifier:

Gene identifier to visualize

False Discovery Rate:

Display transcripts:

If Yes, the transcripts are displayed in the plot. Default: No

Display transcript names:

If Yes, the names of the transcripts are shown. Default: No

Plot count values from the individual samples:

If yes, provides a plot of the counts normalized by the size factors. Default: No

Plot exon usage:

If yes, the samples gene expression effects are averaged out, leaving only exon usage coefficients. Default: No

What it does

This tool enables visualization of DEXSeq results for individual genes. The input is a DEXSeqResults rds file, which can be output from the DEXSeq tool, and a single gene ID or list of IDs to plot.