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Nextclade (version 2.7.0+galaxy0)

FASTA file with input sequences:

Organism:

Version of database to use:

Cached nextclade database release:

Output options:

Output reports and optionally tree

Include header line in output file:

Use advanced options:

What it does

Nextclade assigns clades, calls mutations and performs sequence quality checks on SARS-CoV-2 genomes.

For a description of nextclade's configuration files, see the nextclade documentation.

Input

Input is a FASTA file containing one or more SARS-CoV-2 consensus genomes.

Output

Outputs can include:

A tabular format file with a report, one line per input sequence
A JSON format file with the same information as is present in the tabular report
An Auspice v2 tree file in JSON format