Escher Visualization Tool

Overview

This tool generates an interactive HTML visualization of metabolic flux distributions in a Genome-scale Metabolic Model (GEM) using Escher.

Inputs

• Model File (Required): COBRA-compatible metabolic model file
• Flux Distribution (Optional): a pre-calculated flux distribution
• Model constraints (Optional): constraints to apply during model simulation if no flux distribution is provided
• Map Selection (Optional): maps for common metabolic models

Output

The tool generates an interactive HTML file that: * Displays metabolic pathways with reaction fluxes * Allows zooming and panning * Enables hovering over reactions for detailed information * Provides options for customizing the visualization

Tips

• Ensure your model is properly formatted and constrained
• For large models, consider visualizing specific subsystems
• Custom maps should follow Escher's JSON format
• The visualization works best with modern web browsers

For more information about Escher, visit: https://escher.github.io/