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CONCOCT: Generate the input coverage table (version 1.1.0+galaxy2)
The file should have four columns representing: 'Contig ID, Start Position, End Position and SubContig ID' respectively. The Subcontig ID must contain the pattern 'concoct_part_[0-9]*' while the contigs which are not cutup cannot contain this pattern. This file can be generated by the CONCOCT: Cut up contigs tool.
Information used to process the BAM files
BAM file with mappings to the original contigs, after sorting

What it does

Accepts an assembled (and possibly cut by the Cut fasta contigs tool) fasta contigs file and a tabular coverage histogram file (produced by the bedtools Genomve Coverage tool) and outputs a tabular coverage file for use as the input to the CONCOCT metagenome binning tool.

The intended use of the CONCOCT tools is shown in the following image.

/repository/static/images/dc489bf85eeb1e34/pipeline.png

More information may be found on the CONCOCT homepage:: https://github.com/BinPro/CONCOCT