Description

This tool is used for cross-comparison purpose between several lists having a common key (e.g. IDs) and draw a venn diagram from lists/files using the Jvenn plug-in (see Authors below). It also creates output text file that contain common or specific elements between query and each compared lists/files.

Input

Can be either a list entered in a copy/paste mode or a single or multi-columns file (txt, tsv, csv, tab, output from other tools) up to six lists/files

• List of IDs in a copy/paste mode: IDs have to be separated by a space (e.g. AMY1A ALB IGKC CSTA IGHA1 ACTG1)
• for example an IDs list file in .txt format, with 1 ID per line

If you use a file as input list, it is necessary to specify the column number on which to apply the comparison.

Ids in a line will be split by ";", so if you have this kind of input :

All ID will be considered (i.e. Q06830,P60709,P13646 and P31949 will be split).

In copy/paste mode, the number of IDs considered in input is limited to 5000.

Parameter

"Please enter the name of this list": each list or set should be named, this information will be reported in both output (see below)

Output

Two outputs are generated:

• Graphical file: Venn diagram that you can either display (interactive mode) or download as an image (PNG, SVG format)
• Venn text output file : a text file containing specific elements or shared by lists/files.

Authors

Philippe Bardou, Jérôme Mariette, Frédéric Escudié, Christophe Djemiel and Christophe Klopp. jvenn: an interactive Venn diagram viewer. BMC Bioinformatics 2014, 15:293 doi:10.1186/1471-2105-15-293

Galaxy integration

Lien Nguyen, David Chistiany, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR

Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit,Migale Bioinformatics platform

Help: contact@proteore.org for any questions or concerns about this tool.