Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.
The degap.seqs command reads a fasta file and outputs a fasta containing the sequences after all gap characters are removed.
v1.21.0: Updated to Mothur 1.33