FROGS datamanager allows to download preformated databases for FROGS Affiliation OTU tool.

All databases are available at http://genoweb.toulouse.inra.fr/frogs_databanks/assignation/.

This tools is based on the FROGS_databases.tsv.txt, that we update each time a new database is formatted.

You may download all databases, but you may (should) filter whished database on different criteria:

• on a date, to download only last formated databases
• on an amplicon type
• on a base name
• eventually on a filtered name, this may be the case for example, for 16S SILVA database, for which we provide reference sequence with pintail score above a threshold

Last option allow you to download only last version of previously selected databases, indeed we provide reference database since 2016 with for example, around 1 version of SILVA per year.

Contact

Contacts: frogs-support@inrae.fr

Repositories: https://github.com/geraldinepascal/FROGS, https://github.com/geraldinepascal/FROGS-wrappers

Website: http://frogs.toulouse.inrae.fr/