Galaxy |

Create.database (version 1.39.5.0)

list or shared - OTU List of Shared:

repfasta - rep.fasta:

rep.fasta file generated by get.oturep

repname/count - Representative sequences:

rep.name file or rep.count_table file generated by get.oturep

constaxonomy - Consensus Taxonomy:

consensus taxonomy file output by classify.otu

group - Groups for summary file:

label - OTU Labels:

Select exactly one label. If none selected, first label in your list or shared file will be used

Output logfile?:

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The create.database command reads a list or shared file, .cons.taxonomy, .rep.fasta, .rep.names and optional group file, and creates a database file.

v.1.28.0: Updated to Mothur 1.33, added count paramter.