Galaxy |

OpenPepXL (version 3.1+galaxy0)

Input file containing the spectra:

select mzml data sets(s)

Input file containing the linked mass peaks:

select consensusxml data sets(s)

Input file containing the protein database:

select fasta data sets(s)

String that was appended (or prefixed - see 'prefix' flag below) to the accessions in the protein database to indicate decoy proteins:

Set to true, if the decoy_string is a prefix of accessions in the protein database:

Otherwise it is a suffix

Precursor filtering settings

Precursor filtering settings 0

Fragment peak matching settings

Fragment peak matching settings 0

Peptide modification settings

Peptide modification settings 0

Settings for digesting proteins into peptides

Settings for digesting proteins into peptides 0

Description of the cross-linker reagents

Description of the cross-linker reagent 0

Additional algorithm settings

Additional algorithm settings 0

Ion types to search for in MS/MS spectras

Ion types to search for in MS/MS spectra 0

Advanced Options

Advanced Options 0

Optional outputs:

Tool for protein-protein cross-linking identification using labeled linkers.