Galaxy |

Simulate CNV (version 0.9.2)

Simulation Type:

Reference Genome:

Reference genome to generate reads from

Number of Reads:

determines the number of reads to be generated for the control and simulated CNV (approximately)

Read Length (bp):

determines the read length fot the generated FASTQ files

Regions Count:

determines how many randomly-generated regions will show CNVs

Minimum Region Length:

Minimum length of each CNV region

Maximum Region Length:

Minimum length of each CNV region

Percentage of amplifications:

determines what fraction of the regions will show amplifications (range: 0.0-1.0)

Percentage of deletions:

determines what fraction of the regions will show deletions (range: 0.0-1.0)

Variation minimum:

determines the minumum number of amplifications/deletions introduced in each region

Variation maximum:

determines the maximum number of amplifications/deletions introduced in each region